Karl-Henrik Larsson
Refereed publications 2004-2010
Nilsson RH, Larsson K-H & Ursing BM 2004. galaxie - a CGI script for sequence identification through automated phylogenetic analysis. Bioinformatics 20: 1447–1452.
Larsson K-H, Larsson E & Kõljalg U 2004. High phylogenetic diversity among corticioid homobasidiomycetes. Mycological Research 108: 983-–1002.
Nilsson RH, Rajashekar B, Larsson K-H & Ursing BM 2004. galaxieEST: addressing EST identity through automated phylogenetic analysis. BMC Bioinformatics 2004, 5:87.
Parmasto E, Nilsson RH & Larsson K-H 2004. Cortbase version 2 – far-reaching updates of a nomenclatural database of corticioid fungi (Hymenomycetes). Phyloinformatics 5: 1–7.
Binder M, Hibbett DL, Larsson K-H, Larsson E, Langer E & Langer G 2005. The phylogenetic distribution of resupinate forms in the homobasidiomycetes. Systematics and Biodiversity 3: 113–157.
Vasiliauskas R, Larsson E, Larsson K-H & Stenlid J 2005. Persistence and long-term impact of Rotstop® biological control agent on mycodiversity in Picea abies stumps. Biological Control 32: 295–304.
Vasiliauskas R, Lygis V, Larsson K-H & Stenlid J 2005. Airborne fungal colonisation of coarse woody debris in North Temperate Picea abies forest: impact of season and local spatial scale. Mycological Research 109: 487–496.
Kõljalg U, Larsson K-H et al. 2005. UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi. New Phytologist 166: 1063–1068.
Lygis V, Vasiliauskas R, Larsson K-H & Stenlid J 2005. Wood-inhabiting fungi in stems of Fraxinus excelsior in declining ash stands of northern Lithuania, with particular reference to Armillaria cepistipes. Scadinavian Journal of Forest research 20: 337–346.
Nilsson RH, Kristiansson E, Ryberg M & Larsson K-H 2005. Approaching the taxonomic affiliation of unidentified sequences in public databases - an example from the mycorrhizal fungi. BMC Bioinformatics 2005, 6:178.
Niemelä T, Kinnunen J, Larsson K-H, Schigel DS & Larsson E 2005. Genus revisions and new combinations of some North European polypores. Karstenia 45: 75–80.
Nilsson RH, Larsson K-H, Larsson E & Kõljalg U 2006. Fruiting body-guided molecular identification of root-tip mantle mycelia provides strong indications of ectomycorrhizal associations in two species of Sistotrema (Basidiomycota) Mycological Research 110: 1426–1432.
Nilsson RH, Ryberg M, Kristiansson E, Abarenkov K, Larsson K-H & Kõljalg U 2006 Taxonomic reliability of DNA sequences in public sequence databases - a fungal perspective. PLoS ONE 1(1): e59 (pp1–4).
Miettinen O & Larsson K-H 2006. Trechispora elongata species nova from North Europe. Mycotaxon 96: 193–198.
Moncalvo J-M, Nilsson RH, Dunham S, Bernauer T, Matheny PB, McLenon T, Weiss M, Danell E, Langer G Langer E, Larsson E, Larsson K-H & Vilgalys R 2006. The cantharelloid clade: dealing with incongruent gene trees and phylogenetic reconstruction methods. Mycologia 98: 937–948.
Larsson K-H, Parmasto E, Fischer M, Langer E, Nakasone K & Redhead S 2006. Hymenochaetales: a molecular phylogeny of the hymenochaetoid clade. Mycologia 98: 926–936.
Miller SL, Larsson E, Larsson K-H, Verbeken A & Nuytinck J 2006. Perspectives in the new Russulales. Mycologia, 98: 960–970.
Mueller GM, Schmit JP, Leacock PR, Buyck B, Cifuentes J, Desjardin DE, Halling RE, Hjortstam K, Iturriaga T, Larsson K-H, Lodge DJ, May TW, Minter D, Rajchenberg M, Redhead SA, Ryvarden L, Trappe JM, Watling R & Wu Q 2007. Global diversity and distribution of macrofungi. Biodiversity and Conservation 16: 37–48.
Larsson K-H 2007. Molecular phylogeny of Hyphoderma and the reinstatement of Peniophorella. Mycological Research 111: 186–195.
Larsson K-H 2007. Rethinking the classification of corticioid fungi. Mycological Research 111: 1040–1063.
Dunham S, Larsson K-H & Spatafora J 2007. Diversity and community structure of mat-forming ectomycorrhizal fungi in old growth and rotation age stands of the HJ Andrews Experimental Forest, Oregon, USA. Mycorrhiza 17: 633–645.
Niemelä T, Larsson K-H, Dai Y-C & Larsson E 2007. Anomoloma gen. nova, separated from Anomoporia (Basidiomycota) on the basis of decay type and molecular phylogenetic data. Mycotaxon 100: 305–318.
Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, Eriksson OE, Huhndorf S, James T, Kirk PM, Lücking R, Lumbsch T, Lutzoni F, Matheny PB, Mclaughlin DJ, Powell MJ, Redhead S, Schoch CL, Spatafora JW, Stalpers JA, Vilgalys R, Aime MC, Aptroot A, Bauer R, Begerow D, Benny GL, Castlebury LA, Crous PW, Dai YCheng, Gams W, Geiser DM, Griffith GW, Gueidan C, Hawksworth DL, Hestmark G, Hosaka K, Humber RA, Hyde K, Ironside JE, Kõljalg U, Kurtzman CP, Larsson K-H, Lichtwardt R, Longcore J, Miadlikowska J, Miller A, Moncalvo JM, Mozley-Standridge S, Oberwinkler F, Parmasto E, Reeb V, Rogers JD, Roux C, Ryvarden L, Sampaio JP, Schüssler A, Sugiyama J, Thorn RG, Tibell L, Untereiner WA, Walker C, Wang Z, Weir A, Weiss M, White MM, Winka K, Yao YJian, Zhang N 2007. A higher-level phylogenetic classification of the Fungi. Mycological Research 111:509–547.
Nilsson RH, Kristiansson E, Ryberg M, Hallenberg N & Larsson K-H 2008. Intraspecific ITS variability in the kingdom Fungi as expressed in the international sequence databases and its implications for molecular species identification. Evolutionary Bioinformatics Online. 2008; 4: 193–201.
Larsson E, Jeppson M & Larsson K-H 2009. Taxomomy, ecology and phylogenetic relationships of Bovista pusilla and B. limosa in North Europe. Mycological Progress 8: 289-299.
Kotiranta H, Larsson K-H, Saarenoksa R & Kulju M 2010. Tretomyces gen. novum, Byssocorticium caeruleum sp. nova, and new combinations in Dendrothele and Pseudomerulius (Basidiomycota). Annales Botanici Fennici, in press.
Binder M, Larsson K-H, Matheny PB & Hibbett DS 2010. New orders of Agaricomycetidae Amylocorticiales ord. nov. and Jaapiales ord. nov.: Early diverging clades of Agaricomycetidae were dominated by corticioid forms. Mycologia, in press.
Abarenkov K. Nilsson H, Larsson K-H, Alexander I, Eberhardt U, Erland S, Høiland K, Kjøller R, Larsson E, Pennanen T, Sen R, Taylor A, Tedersoo L & Kõljalg U 2010. The UNITE database for molecular identification of fungi - recent updates and future perspectives. New Phytologist in press.
Ovaskainen O, Nokso-Koivisto J, Hottola J, Rajala T, Pennanen T, Ali-Kovero H, Miettinen O, Oinonen P, Auvinen P, Paulin L, Larsson K-H & Mäkipää R 2010. What is the probability that the best BLAST hit represents the correct species - identifying wood-inhabiting fungi from environmental samples with pyrosequencing. Fungal Ecology, in press.